SubtiBank SubtiBank
ydeL [2018-02-10T15:07:03.000Z]
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ydeL [2018-02-10T15:07:03.000Z]

similar to transcriptional regulator ([SW|MocR/ GabR family])
locus
BSU05240
pI
9.22
mw
53.36 kDa
protein length
463 aa Sequence Blast
gene length
1389 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    571,389 → 572,780

    The protein

    Protein family

  • [SW|MocR/ GabR family ][Pubmed|22020104]

    • Paralogous protein(s)

  • [protein|C7C36FAC0CE72226960FC7E8E016B8EC77AF1036|GabR], [protein|D0498CC264FFC4B4C0DECAEBBBB884DB1122A4B2|YhdI], there are 5 more members of the [SW|MocR/ GabR family ]in B. subtilis

    • [SW|Domains]

  • N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.

    • Structure

  • [PDB|4MGR] ([protein|C7C36FAC0CE72226960FC7E8E016B8EC77AF1036|GabR], 38% identity) [pubmed|24127574]

    • [SW|Localization]

  • nucleoid (Homogeneous) [Pubmed|16479537]

    • Biological materials

    Mutant

  • MGNA-C083 (ydeL::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2081 NBRP B. subtilis, Japan]
  • BKE05240 (Δ[gene|05A23F4611674B0092262DEC309F7AD6B9B5BE30|ydeL]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05240 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTGCGCGTTGTTCTCCT, downstream forward: _UP4_TGAGGGAGCTTTCAGTTTAG
  • BKK05240 (Δ[gene|05A23F4611674B0092262DEC309F7AD6B9B5BE30|ydeL]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05240 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTGCGCGTTGTTCTCCT, downstream forward: _UP4_TGAGGGAGCTTTCAGTTTAG

    • References

  • 11756427,16479537,21630458,22020104,24127574